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Introduction to Mantid and Python course

Introduction to Mantid and Python course

Late last night I landed in a plane from London, after a great week at the Rutherford Appleton Laboratories (RAL) in Oxfordshire, England. I’ve been following a week-long course on the instrument management and data analysis software Mantid, also including some rudimentary introductions to Python. A lot of it was very introductory (which was also the point, I guess), but at least now I have a good feel for how the software can be used both on an instrument and on my own machine for data analysis.

It’s a shame that there is no SXD instrument model in the software yet, so I could work on my time-of-flight data on there – but at least the guys teaching us (the same guys that made the software) were very eager to help people with starting up their own models too. So if I get the time, it seems like I have that option.

I stayed in the same small Bed & Breakfast in East Hendred as last time I was at ISIS (which is also at RAL), although this time I got a room a little outside of town, so I had to walk through their little yard to get to the bus stop. That made for wet shoes from the morning dew, but also some really pretty sunrises!

The little Bed & Breakfast yard made for some spectacular mornings

The little Bed & Breakfast yard made for some spectacular mornings

A little detour to London on the way home

I spent a small part of Friday in London, before going all the way to Heathrow to catch my plane. I went out to the O2 Arena and then the Emirates Air Line. I took the trip back and forth over the water – with some absolutely beautiful views of the city! I also found time to go to Greenwich Park, where the GMT line is located – and I believe that it is a Unesco World Heritage spot too! The park is huge, but I managed to walk up the hill to the Royal Observatory to enjoy the view. You can basically see all of London from up there (that’s shown in the picture at the top of this post)!

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Structural State of Minerals and its Applications course

PhD course on different software used for X-ray scattering (both powders and single crystals), primarily on minerals – held at the Geocenter at the University of Copenhagen. The course addressed the use of the structural information obtained by modern diffraction methods and computational approaches in mineralogy and materials science and was mainly directed towards PhD students in geosciences and related disciplines. I was hoping to learn more about – in particular – superstructures and how to handle them, since these are found in a lot of mineralogical samples.

We spent a lot of time on basics of crystal structures and diffraction – which was a repeat of what I’ve seen a lot already – but then moved on to looking at behaviour of crystals under varying temperature and pressure, powder diffraction and applications and finally structure interpretation and specific applications in geoscience and material science. We had both lectures and experimental work with an introduction to modern diffractometers using one of the X-ray diffractometers at the department. We also got to test out a range of different crystallographic software in short tutorials.

All in all, I’m not sure if I learned much about superstructures that I didn’t already know, and I definitely did not find the holy grail of how to solve my crystal data – but, if nothing else – it was an interesting course with some new knowledge.

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Courses on peer-review, writing techniques, and project management

This last week I have been following a (double) course arranged by the Dark Cosmology Center. They hired in the professional education company Tress&Tress, who arranged two of their courses right after each other – first two days on project management and scheduling, and then three days about writing techniques and the peer-review process in international scientific journals – under the titles “Coping with the challenges of a PhD” and “How to publish in peer-reviewed journals”.

These two people teaching, Dr. Bärbel Tress and Dr. Gunther Tress, were immensely inspiring – and both managed to make the classes interesting and worthwhile. I learned so much about the whole process of writing for scientific journals, as well as about the whole process of going through major projects like a PhD – and I’ll be able to use these new tools directly in my daily life. I can highly recommend to follow these courses if Tress&Tress ever near you!

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Responsible Conduct of Research course

These last two days, I’ve spent my mornings at the old faculty of life sciences, following the new mandatory PhD course Responsible Conduct of Research. The course was started because of the problems with the neuro-science (or what was it?) researcher Milena Penkowa, who did a lot of bad things (read; science misconduct). I don’t know exactly what the logic was, but I think the people at the top of the university thought it would make them look good if they demanded all PhD students to follow a course on the matters of misconduct and politics.

First, I was appaled by the sheer weight of the papers they wanted us to read: Not only news-paper clips and guides, but huge pieces of law texts. I haven’t had that much trouble getting through a curriculum since following the (also mandatory, but on the bachelor education in physics) course in science ethics and history/theory. I guess I learned a bit though – I now know what the different committees are called, and what they do, and I learned about a couple of cases where people have done wrong. But all in all, most of what they made me read what logics, and I felt a bit stupid for actually following their demands of reading it – I might as well just have thought it up myself.

The lectures on the two mornings were fine, though, but maybe (who am I kidding, not maybe, definetely!) boring. At least we got free coffee…

To pass the course, you have to write a two-page essay on a case from your own scientific environment or work, related to the curriculum of the course. I haven’t written an essay since high school, and I’ve always hated it. For now, I have no idea what I want to write about, and I really don’t know how I’ll be able to write something I’ll be happy about handing in. Let’s see what I end up with…

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