Workshops, schools, and courses

Aperiodic Crystals school in Antwerp

Aperiodic Crystals school in Antwerp

This last week I participated in the Aperiodic Crystals school held at the University of Antwerp in Belgium. It was a week of lectures and tutorials on modulated crystal structures and quasicrystals, and was basically perfectly catered for what I need for my continued PhD project.

Apart from learning a bunch of useful knowledge about superspace and superstructures, I also got some more knowledge about how to use JANA2006 to solve (in)commensurately modulated structures from single crystal data. Now I just have to figure out how to index the data that I already have…

The week ended up being super busy for me, but there was some time in the evenings to go out with people, finding interesting local beer and food. I was especially happy about finally trying cherry beer (kriek), which I’d never even heard of before. I also got to meet a lot of new awesome people, both fellow participants of the school and lecturers – some of which I’ll meet again soon at the ECM-30 conference in Basel at the end of August.

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Swedish Neutron Scattering Society meeting in Lund

I went to the annual Swedish Neutron Scattering Society meeting held in Lund, Sweden, this year – on Monday May 30th and Tuesday May 31st – to kind of get a feel for what is happening on the other side of the water from here in Copenhagen. I got to listen to a lot of interesting talks – many of them centered around instrument development for ESS and MAX IV – as well as present a poster on some of my more recent work.

On Tuesday we went on a tour to the almost finished MAX IV synchrotron, as well as the ESS – still in the building phase. It was super interesting to see both!

On my trips (I went back and forth by train over Øresund both days) I had some fun taking little video clips, finally resulting in a little video:

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Way too few updates

It feels like I’ve been updating this blog way too rarely the last couple of years – and that’s also the case for the web site as a whole. The last couple of days I have been procrastinating a bit, and had some fun with re-coding parts of the page, and setting up statistics. Turns out, a lot of the notes collections and old hand-ins get a lot of traffic, and it’s interesting for me to look at statistics for this.

Since the last post, I participated in several workshops, courses, experiments and conferences. Worth mentioning was the ICNS conference in Edinburgh, Scotland, two summers ago (July 2013), and a very exciting experiment at IN12 (ILL, France) the same month.

I finished all my teaching responsibilities, after having been a course instructor in the Experimental Physics course three times (although the first time was before I started my PhD) and once in the Neutron Scattering course, plus a couple of smaller things at different summer schools. I’m also almost done with taking courses, since I participated in a large number of workshops during the first part of my studies. I’ve had over a year long hiatus from my studies due to personal issues, and am currently working on getting back, by finishing my master thesis so I can continue on the PhD plan I started back in March 2012. Hopefully this will be over with in the beginning of this summer.

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Introduction to Mantid and Python course

Introduction to Mantid and Python course

Late last night I landed in a plane from London, after a great week at the Rutherford Appleton Laboratories (RAL) in Oxfordshire, England. I’ve been following a week-long course on the instrument management and data analysis software Mantid, also including some rudimentary introductions to Python. A lot of it was very introductory (which was also the point, I guess), but at least now I have a good feel for how the software can be used both on an instrument and on my own machine for data analysis.

It’s a shame that there is no SXD instrument model in the software yet, so I could work on my time-of-flight data on there – but at least the guys teaching us (the same guys that made the software) were very eager to help people with starting up their own models too. So if I get the time, it seems like I have that option.

I stayed in the same small Bed & Breakfast in East Hendred as last time I was at ISIS (which is also at RAL), although this time I got a room a little outside of town, so I had to walk through their little yard to get to the bus stop. That made for wet shoes from the morning dew, but also some really pretty sunrises!

The little Bed & Breakfast yard made for some spectacular mornings

The little Bed & Breakfast yard made for some spectacular mornings

A little detour to London on the way home

I spent a small part of Friday in London, before going all the way to Heathrow to catch my plane. I went out to the O2 Arena and then the Emirates Air Line. I took the trip back and forth over the water – with some absolutely beautiful views of the city! I also found time to go to Greenwich Park, where the GMT line is located – and I believe that it is a Unesco World Heritage spot too! The park is huge, but I managed to walk up the hill to the Royal Observatory to enjoy the view. You can basically see all of London from up there (that’s shown in the picture at the top of this post)!

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Structural State of Minerals and its Applications course

PhD course on different software used for X-ray scattering (both powders and single crystals), primarily on minerals – held at the Geocenter at the University of Copenhagen. The course addressed the use of the structural information obtained by modern diffraction methods and computational approaches in mineralogy and materials science and was mainly directed towards PhD students in geosciences and related disciplines. I was hoping to learn more about – in particular – superstructures and how to handle them, since these are found in a lot of mineralogical samples.

We spent a lot of time on basics of crystal structures and diffraction – which was a repeat of what I’ve seen a lot already – but then moved on to looking at behaviour of crystals under varying temperature and pressure, powder diffraction and applications and finally structure interpretation and specific applications in geoscience and material science. We had both lectures and experimental work with an introduction to modern diffractometers using one of the X-ray diffractometers at the department. We also got to test out a range of different crystallographic software in short tutorials.

All in all, I’m not sure if I learned much about superstructures that I didn’t already know, and I definitely did not find the holy grail of how to solve my crystal data – but, if nothing else – it was an interesting course with some new knowledge.

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Courses on peer-review, writing techniques, and project management

This last week I have been following a (double) course arranged by the Dark Cosmology Center. They hired in the professional education company Tress&Tress, who arranged two of their courses right after each other – first two days on project management and scheduling, and then three days about writing techniques and the peer-review process in international scientific journals – under the titles “Coping with the challenges of a PhD” and “How to publish in peer-reviewed journals”.

These two people teaching, Dr. Bärbel Tress and Dr. Gunther Tress, were immensely inspiring – and both managed to make the classes interesting and worthwhile. I learned so much about the whole process of writing for scientific journals, as well as about the whole process of going through major projects like a PhD – and I’ll be able to use these new tools directly in my daily life. I can highly recommend to follow these courses if Tress&Tress ever near you!

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Back from Neutron Scattering Software Workshop in Berlin

Back from Neutron Scattering Software Workshop in Berlin

After the ADD workshop at the ILL in France, I went to Germany, to participate in yet another workshop in Berlin. This time the theme of the workshop was software for neutron scattering, and I learned so much. A bunch of software developers, as well as researchers interested in software, showed up, and there were so many great discussions and presentations of software and what is needed of software. I also got ample opportunities to network a bunch, so that was great.

I found a little time – on the evening of the last day – to go to Alexanderplatz, where there was a market going on. They had music and tonnes of little cute booths selling sausages and all kinds of sweet foods. They also had some pretty silly music going on (see the video further down if you care).

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ADD2013 workshop at ILL

ADD2013 workshop at ILL

During the last week, I’ve been in France, participating in the ADD workshop at the ILL in Grenoble. It has been a week of tutorials and lectures on different programs and methods that are used for real-space analysis of diffraction data. I got to test out the PDFgui program, which was interesting – since I’d heard about it at the conference in Santa Fe last October.

I got to present a poster as well, but simply used the same poster as the one I presented at the Flipper workshop back in January. I still did not get much of a response in terms of ideas on how to refine my superstructures, but did get plenty of friendly – although slightly unoptimistic – encouragement to continue my work. Sigh.

I also got a bit of time in the evenings to go explore Grenoble, and I found myself getting on the cable cars to the Bastille on top of one of the mountains surrounding the city. The view from up there was spectacular!

When I was done exploring and wandering around, I took the cable car down – and basically got the whole thing to myself. That prompted me to record the descent, with the view of the city in the early sunset – so if you’re interested, have a look at the video below!

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Flipper2013 workshop at ILL

Flipper2013 workshop at ILL

Since Tuesday, I’ve been at the ILL, attending this years Flipper workshop on the use of polarized neutrons. I was primarily there to learn, since I still haven’t gone much into polarized neutrons, and I have never used them for any experiments.

It was a great workshop, and I learned a lot of new things. I’m still not sure how relevant the things I learned actually are for my PhD project, but at least I met a lot of interesting people. I also presented a poster on the work I’ve done so far on my LCO crystal system – but since we haven’t been able to refine the structure yet, it was mostly a presentation of our awesome data. A few people had a look at it, and openly said that it was going to take a while to get that solved.. so that’s not comforting at all.

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Total scattering workshop in Santa Fe

Total scattering workshop in Santa Fe

From October 14th to 23rd, I was in the states for the first time. I went to Santa Fe (New Mexico) to attend a workshop/conference on total scattering, the Advanced Simulation Techniques for Total Scattering Data conference, arranged by people from Los Alamos National Laboratory, and Oak Ridge National Laboratory.

The actual conference was only from the 16th to the 19th, so I had a few days on each side to go around town and be a bit of a turist. I brought my camera, and got a lot of nice shots (although I’ll have to find the time to actually do the editing and sorting of them later).

My flight there went through Heathrow and Dallas Fort Worth, and turned out to end in a mess – both ways. On the way over there, some very thick fog had hidden Heathrow, and we had to fly in circles – eventually landing in Stanstead to get re-fueled, before we could finally land – more than an hour late – in Heathrow. Of course I missed my Atlantic flight, but luckily I got on the next available one, and still caught my connecting flight in Dallas. My luggage wasn’t as lucky, though.. The people in Dallas were really bad at handling the situation, and it was first when I landed in Santa Fe that people could help me on with the luggage problem (at which time it was too late to send the luggage on from Heathrow, so I had to wait to the evening after). On the way back, our landing in Heathrow got delayed because of the number of planes waiting, and I nearly missed my connecting flight to Copenhagen. The people at Heathrow were nice enough to hand out special orange tickets for people connecting with flights that left soon, but they didn’t take into account that the name ‘Jensen’ is very common in Denmark, and hence stupidly enough only made one ‘Jensen’ ticket, and gave that one to the other ‘Jensen’ Dane that was going on the same plane. So I had to go through the normal procedures, and just caught the plane in time. Of course, my luggage didn’t, again. But oh well, at least I got home.

The conference itself was really nice – both the practical arrangements, the small PDFgui tutorial, the talks, and the trip to Los Alamos, were really well planned and executed. I learned a lot of new information about total scattering, and what it can be used for, and met a lot of cool people. I was really happy to talk to a couple of people from ORNL, to hear how things work over there, since I will be going there in half a year of so.

The turisting part of the trip went nicely as well – I had some fun walking around town, looking at the old buildings and just getting a feel of things. I went to a local supermarket just to see how it was (I was expecting the people packing your groceries for you, but it still just felt creepy to me..), and I went to lots of small restaurants to get some of the New Mexican food (which I was pleasantly surprised about), especially the chile. I even went all the way through town to see the farmers market, and I’m glad I did; You could get to see how they roast the peppers for the chile – that was fun.

Overall, it was a great trip, and I’m really looking forward to going over there again.

A while later, a meeting report was published for the workshop in Neutron News, which can be viewed here. The picture in the top of this blog entry is also from this report.

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Responsible Conduct of Research course

These last two days, I’ve spent my mornings at the old faculty of life sciences, following the new mandatory PhD course Responsible Conduct of Research. The course was started because of the problems with the neuro-science (or what was it?) researcher Milena Penkowa, who did a lot of bad things (read; science misconduct). I don’t know exactly what the logic was, but I think the people at the top of the university thought it would make them look good if they demanded all PhD students to follow a course on the matters of misconduct and politics.

First, I was appaled by the sheer weight of the papers they wanted us to read: Not only news-paper clips and guides, but huge pieces of law texts. I haven’t had that much trouble getting through a curriculum since following the (also mandatory, but on the bachelor education in physics) course in science ethics and history/theory. I guess I learned a bit though – I now know what the different committees are called, and what they do, and I learned about a couple of cases where people have done wrong. But all in all, most of what they made me read what logics, and I felt a bit stupid for actually following their demands of reading it – I might as well just have thought it up myself.

The lectures on the two mornings were fine, though, but maybe (who am I kidding, not maybe, definetely!) boring. At least we got free coffee…

To pass the course, you have to write a two-page essay on a case from your own scientific environment or work, related to the curriculum of the course. I haven’t written an essay since high school, and I’ve always hated it. For now, I have no idea what I want to write about, and I really don’t know how I’ll be able to write something I’ll be happy about handing in. Let’s see what I end up with…

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One more workshop on the list – this time on DISCUS

During the full last week, I was in Erlangen (Germany, close to Nürnberg), following a workshop on the diffuse scattering simulation program DISCUS.

It was lots of fun, but I had kind of hoped for something else. A lot of the first day (and sub-sequent days) were used on how to use linux and the terminal (and ranting about how bad windows is – that is, using bad and wrong arguments for it…), instead of introducing the program in a good way. We went through a lot of different tutorials, but a lot of it was very hurried, and not very deep. I guess that at least I got a lot of tools back home with me, so if I really need to use the program (I don’t know if I will, yet), I have something to read up on.

I did buy the DISCUS cook book beforehand, and read a little in it (I didn’t get that far because of me being really busy). I must say that it was a really expensive book, due to the fact that you can only get it i hard-cover, but it is well written – and I think I’ve learned far more from that short period of reading in it, than I did from the actual workshop.

All that said, I would probably recommend people going to the workshop if they actually intend to use the program themselves. It’s really hard figuring out the small logic things on your own – like the fact that they have three different independent programs in the package.

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Another workshop

Another workshop

This whole week I have been participating in the Second Annual Niels Bohr International Academy Workshop on ESS Science (yeah, that’s a long name, I know) held here at the Niels Bohr Institute.

During the lectures, we were told a lot about current neutron instruments, and the programming used to analyze data. I also participated in tutorial sessions in the program RMCProfile, and I was really happy to get to know that particular program. I might use it during my Ph.D., if I get the time (and beam time!).

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Jana2006 workshop all done

Jana2006 workshop all done

Home from the first travel after starting my Ph.D. education! I’ve been to Prague, Czech Republic, the last couple of days, following a two day workshop in the crystal-refinement program Jana2006. The workshop was held at the physics institute in Prague, by some of the people that actually wrote the program.

It was fun times, except when I got lost in the area of my hotel because of numerous roadworks messing up my nice google maps printouts!

Unfortunately we only had those two short days, so I did not manage to get into the center of the city to turist around this time – however, I’ve been to Prague once before, so I guess I didn’t miss out on too much. I really want to go again one day though – it’s such a beautiful city.

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